PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096138.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 509aa    MW: 55200.3 Da    PI: 8.4277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.3e-12137161226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C ++++t tCk+Gd+CkF H+
  XP_011096138.1 137 GEKDCAYYMQTRTCKFGDSCKFDHP 161
                     7889********************8 PP

2zf-CCCH34.24.4e-11187213127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f++t  Ck+G rCkF+H++
  XP_011096138.1 187 PGEPDCPYFLKTQRCKFGIRCKFNHPK 213
                     5789*********************96 PP

3zf-CCCH35.22.1e-11234258327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG Ck+G +CkF+H++
  XP_011096138.1 234 EPPCAFYLKTGKCKFGTTCKFHHPK 258
                     79*********************96 PP

4zf-CCCH391.3e-12301326126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++e C+f+++tG CkyG++C+++H+
  XP_011096138.1 301 PGEEDCPFYLKTGSCKYGATCRYNHP 326
                     5899*********************9 PP

5zf-CCCH34.43.6e-11382404426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      +C+++++tG+Ck+G +CkF+H+
  XP_011096138.1 382 LECDYYMKTGICKFGYNCKFHHP 404
                     58********************9 PP

6zf-CCCH37.34.7e-12438459627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+++++tGtCkyG++CkF H+p
  XP_011096138.1 438 CPYYMKTGTCKYGSTCKFDHPP 459
                     ********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.751135163IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5136162IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4141160IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5186213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596186214IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8188213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5191215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4192213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338231259IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5231258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6234258IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-9234258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4236256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61300328IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7300327IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10302326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4306325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972378406IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5378405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6381407IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-9383404IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4384404IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6432459IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.779432460IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6436459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5438457IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9438459IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MANQLYGYTY GGGGGATTLG SSSRYLSADS LSSSSALSSS LLYNPESYST RIPGISVTTP  60
THAYGPPGVD VGSTVVSTDS LYAGLKRTSS ESLYHQTLLG THNKIGQTEA WYSSNPLAKR  120
PRYESTSHLP IYPQRPGEKD CAYYMQTRTC KFGDSCKFDH PIWVPEGGIP DWKEVPPVPA  180
ESLPERPGEP DCPYFLKTQR CKFGIRCKFN HPKDRIAPPG APEDGDILPE RPSEPPCAFY  240
LKTGKCKFGT TCKFHHPKGV QIQSTGVEMG TEVKNTGDAK TGQPPFAPAL MHNSKGLPVR  300
PGEEDCPFYL KTGSCKYGAT CRYNHPDRYA AIASTLLTSP TTHFNLGVIA PTASLLSSFD  360
PRLTQTTLGL GPTIYPQRPG QLECDYYMKT GICKFGYNCK FHHPVDRSAP TASAAESLLQ  420
NVKLTLAGLP RREGAIHCPY YMKTGTCKYG STCKFDHPPP GEVMAVATSQ PGSSSARNCD  480
PTDGGGGGGS SCCSLCLFVD RLRSKWRWN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096138.10.0PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7T0Z40.0D7T0Z4_VITVI; Putative uncharacterized protein
STRINGVIT_19s0085g01180.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-178floral homeotic protein (HUA1)